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4YWH

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM ACTINOBACILLUS SUCCINOGENES 130Z (Asuc_0499, TARGET EFI-511068) WITH BOUND D-XYLOSE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2015-02-11
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths80.796, 37.670, 105.336
Unit cell angles90.00, 91.50, 90.00
Refinement procedure
Resolution24.838 - 2.350
R-factor0.1607
Rwork0.157
R-free0.23820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ma0
RMSD bond length0.014
RMSD bond angle1.410
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]24.838500.0002.390
High resolution limit [Å]2.3506.3802.350
Rmerge0.0830.0480.750
Rmeas0.0930.0530.855
Rpim0.0400.0220.399
Total number of observations133133
Number of reflections26617
<I/σ(I)>9
Completeness [%]97.697.789.7
Redundancy55.33.9
CC(1/2)0.9930.764
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5298Protein (10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-Xylose); Reservoir (MCSG1 G4)(0.2 M Potassium Sodium Tartrate, 20 %(w/v) PEG 3350); Cryoprotection (20% Ethylene Glycol, 80% Reservoir)

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PDB entries from 2025-07-16

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