4YRI
Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with 1-(3-bromophenyl)methanamine (Chem 166)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-01-09 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 64.382, 118.685, 66.108 |
Unit cell angles | 90.00, 92.68, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.000 |
R-factor | 0.1922 |
Rwork | 0.190 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lc0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.161 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | REFMAC |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.940 | 36.940 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.047 | 0.015 | 0.325 |
Rpim | 0.032 | 0.011 | 0.259 |
Total number of observations | 87865 | 1000 | 2993 |
Number of reflections | 31161 | ||
<I/σ(I)> | 18.5 | 77.2 | 2.6 |
Completeness [%] | 93.2 | 90.3 | 58.5 |
Redundancy | 2.8 | 2.9 | 2.1 |
CC(1/2) | 0.999 | 0.999 | 0.859 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP |