4YQZ
Crystal Structure of a putative oxidoreductase from Thermus Thermophilus HB27 (TT_P0034, TARGET EFI-513932) in its APO form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-24 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 76.436, 65.752, 85.759 |
Unit cell angles | 90.00, 95.43, 90.00 |
Refinement procedure
Resolution | 25.091 - 1.807 |
R-factor | 0.1666 |
Rwork | 0.164 |
R-free | 0.20950 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.078 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.890 | 1.800 |
Rmerge | 0.066 | 0.037 | 0.935 |
Rmeas | 0.069 | 0.040 | |
Rpim | 0.026 | 0.015 | 0.370 |
Total number of observations | 573677 | ||
Number of reflections | 76823 | ||
<I/σ(I)> | 9.8 | ||
Completeness [%] | 99.2 | 95.3 | 98.8 |
Redundancy | 7.5 | 7.4 | 7.2 |
CC(1/2) | 0.996 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein, 10mM NAD; Reservoir (0.2 M Calcium chloride, 0.1M Tris: HCl, pH 8.50, 25%(w/v) PEG 4000); Cryoprotection (20% Diethylene glycol, 80% Reservoir) |