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4YQY

Crystal Structure of a putative Dehydrogenase from Sulfitobacter sp. (COG1028) (TARGET EFI-513936) in its APO form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2015-02-24
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 41 21 2
Unit cell lengths84.795, 84.795, 126.160
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.411 - 1.381
R-factor0.1739
Rwork0.173
R-free0.18620
Structure solution methodSAD
RMSD bond length0.006
RMSD bond angle1.115
Data reduction softwareHKL-3000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine: 1.9_1692))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0001.400
High resolution limit [Å]1.3803.7501.380
Rmerge0.1100.0510.932
Rmeas0.1130.0520.957
Rpim0.0250.0120.218
Total number of observations1841271
Number of reflections94000
<I/σ(I)>7.5
Completeness [%]99.39998.7
Redundancy19.618.318.6
CC(1/2)0.9980.891
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298Protein, 10 mM NAD; Reservoir (0.2 M Magnesium chloride, 0.1M Tris:HCl, pH 8.50, 25%(w/v) PEG 3350); Cryoprotection (100% Reservoir)

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PDB entries from 2024-05-15

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