4YQY
Crystal Structure of a putative Dehydrogenase from Sulfitobacter sp. (COG1028) (TARGET EFI-513936) in its APO form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-24 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 84.795, 84.795, 126.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.411 - 1.381 |
R-factor | 0.1739 |
Rwork | 0.173 |
R-free | 0.18620 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 1.115 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.400 |
High resolution limit [Å] | 1.380 | 3.750 | 1.380 |
Rmerge | 0.110 | 0.051 | 0.932 |
Rmeas | 0.113 | 0.052 | 0.957 |
Rpim | 0.025 | 0.012 | 0.218 |
Total number of observations | 1841271 | ||
Number of reflections | 94000 | ||
<I/σ(I)> | 7.5 | ||
Completeness [%] | 99.3 | 99 | 98.7 |
Redundancy | 19.6 | 18.3 | 18.6 |
CC(1/2) | 0.998 | 0.891 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein, 10 mM NAD; Reservoir (0.2 M Magnesium chloride, 0.1M Tris:HCl, pH 8.50, 25%(w/v) PEG 3350); Cryoprotection (100% Reservoir) |