4YOY
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT and Mg2+ ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2014-01-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.878, 94.891, 106.457 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.911 - 1.950 |
R-factor | 0.1814 |
Rwork | 0.180 |
R-free | 0.20420 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.130 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.836 | 19.911 | 2.060 |
High resolution limit [Å] | 1.950 | 6.170 | 1.950 |
Rmerge | 0.039 | 0.843 | |
Rmeas | 0.095 | ||
Rpim | 0.036 | 0.017 | 0.360 |
Total number of observations | 494382 | 14162 | 64743 |
Number of reflections | 70614 | ||
<I/σ(I)> | 13 | 35.7 | 2.4 |
Completeness [%] | 99.9 | 96.8 | 100 |
Redundancy | 7 | 6 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 293 | MES, PEG6000, LiCl |