4YOV
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2014-01-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.676, 95.099, 105.266 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.800 - 2.050 |
R-factor | 0.1931 |
Rwork | 0.191 |
R-free | 0.23250 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.122 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.567 | 19.800 | 2.160 |
High resolution limit [Å] | 2.050 | 6.480 | 2.050 |
Rmerge | 0.029 | 0.485 | |
Rmeas | 0.062 | ||
Rpim | 0.024 | 0.012 | 0.259 |
Total number of observations | 403350 | 13238 | 36288 |
Number of reflections | 59879 | ||
<I/σ(I)> | 17.1 | 48 | 2.8 |
Completeness [%] | 99.3 | 96.2 | 96.4 |
Redundancy | 6.7 | 6.6 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 293 | MES, PEG6000, LiCl |