4YLY
Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, staphylococcus aureus at 2.25 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.752, 70.604, 128.751 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.070 - 2.250 |
R-factor | 0.19575 |
Rwork | 0.193 |
R-free | 0.24313 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ryn |
RMSD bond length | 0.010 |
RMSD bond angle | 1.393 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 50.000 |
High resolution limit [Å] | 2.250 |
Number of reflections | 21922 |
<I/σ(I)> | 15.27 |
Completeness [%] | 99.6 |
Redundancy | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 289 | 25% PEG 3350, 0.2 M ammonium sulfate, 0.1 M Hepes PH 7.5 |