Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YDB

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.03 angstrom -UV irradiated crystal- 3rd cycle

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2014-07-13
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.9786
Spacegroup nameP 31 2 1
Unit cell lengths58.655, 58.655, 100.352
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution35.697 - 2.030
R-factor0.2082
Rwork0.206
R-free0.25220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2g7b
RMSD bond length0.008
RMSD bond angle1.147
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX ((phenix.refine: 1.7.2_869))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.070
High resolution limit [Å]2.0302.030
Rmerge0.0670.557
Number of reflections13508
<I/σ(I)>38.814.38
Completeness [%]100.099.8
Redundancy10.810.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP627712% PEG3350, 8% Tacsimate pH 6.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon