4YBZ
Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with ADP and with phosphorylated phosphohistidine segment (site I orientation)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-08-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.303, 109.879, 126.776 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 83.032 - 2.100 |
R-factor | 0.2177 |
Rwork | 0.216 |
R-free | 0.25340 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.970 |
Data reduction software | XDS (March 30, 2013) |
Data scaling software | Aimless (0.3.11) |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.032 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.202 | 2.233 |
Number of reflections | 85835 | |
<I/σ(I)> | 7.5 | 0.8 |
Completeness [%] | 99.5 | 99.1 |
Redundancy | 6.7 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 278 | 100 mM Tris/HCl pH 8.5, 18% (w/v) PEG6000, 30 mM MgCl2 |