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4Y3U

The structure of phospholamban bound to the calcium pump SERCA1a

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-08-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.987
Spacegroup nameP 21 21 21
Unit cell lengths61.745, 91.825, 316.256
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.790 - 3.510
R-factor0.23697
Rwork0.235
R-free0.27735
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)4kyt
RMSD bond length0.005
RMSD bond angle1.021
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.560
High resolution limit [Å]3.5003.500
Rmerge0.0870.543
Number of reflections23282
<I/σ(I)>16.462.47
Completeness [%]99.0100
Redundancy4.74.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72771 UL OF SERCA1A AT 15 MG/ML IN 2% N- NONYL-BETA-D-MALTOPYRANOSIDE (NONYL MALTOSIDE) (ANATRACE), 20% GLYCEROL, 100 MM MOPS (PH 7.0), 0.12 M SUCROSE, 80 MM KCL, 3 MM MGCL2, AND 2.8 MM EGTA WAS MIXED WITH 1 UL OF PHOSPHOLAMBAN AT 2.1 MG/ML IN 20 MM MOPS (PH 7.2), 20% GLYCEROL, AND 0.1 % DECYLMALTOSIDE OR 0.01% DODECYL MALTOSIDE. THIS PROTEIN MIXTURE WAS THEN ADDED TO AN EQUAL VOLUME OF CRYSTALLIZATION LIQUOR; 15 % GLYCEROL, 17% (W/V) PEG-2000, 200MM NAOAC, AND 5 MM BETA-MERCOPTOETHANOL)

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PDB entries from 2024-05-15

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