4XZP
Crystal structure of the N-terminal domain of human galectin-4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-05-11 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 72.550, 72.550, 110.302 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.730 - 1.480 |
R-factor | 0.15 |
Rwork | 0.148 |
R-free | 0.18390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dyc |
RMSD bond length | 0.006 |
RMSD bond angle | 1.109 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9-1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.730 | 31.730 | 1.560 |
High resolution limit [Å] | 1.480 | 4.680 | 1.480 |
Rmerge | 0.056 | 0.039 | 0.532 |
Rpim | 0.017 | 0.011 | 0.157 |
Total number of observations | 350098 | 13394 | 51170 |
Number of reflections | 29321 | ||
<I/σ(I)> | 23.5 | 57.6 | 4.8 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 11.9 | 12.3 | 12.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 294 | 0.1 M Tris-HCl pH 8.5, 16% PEG 8000, 0.2 M calcium acetate hydrate |