4XXS
Crystal structure of BACE1 with a pyrazole-substituted tetrahydropyran thioamidine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 83 |
Detector technology | PIXEL |
Collection date | 2012-03-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 102.350, 102.350, 170.550 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 27.230 - 1.860 |
R-factor | 0.1831 |
Rwork | 0.182 |
R-free | 0.20760 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.080 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BUSTER-TNT |
Refinement software | BUSTER-TNT (BUSTER 2.11.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.890 |
High resolution limit [Å] | 1.860 | 5.050 | 1.860 |
Rmerge | 0.121 | 0.108 | |
Total number of observations | 770525 | ||
Number of reflections | 44909 | ||
<I/σ(I)> | 4.9 | ||
Completeness [%] | 99.8 | 99.8 | 96.6 |
Redundancy | 17.2 | 17.3 | 7.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 291 | BACE1 lacking the pro-segment was concentrated to ~14 mg/mL in 20 mM Tris pH 7.4 and 250 mM NaCl. Crystallization was carried out by the vapor diffusion method against 200 mM sodium citrate tribasic dihydrate, 22% PEG 5K monomethyl ether and 200 mM ammonium iodide. |