4XTP
Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with Tn antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.915 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 56.093, 86.024, 128.877 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.550 - 1.970 |
R-factor | 0.2007 |
Rwork | 0.198 |
R-free | 0.25440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4u2a |
RMSD bond length | 0.014 |
RMSD bond angle | 1.463 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.550 | 46.986 | 2.070 |
High resolution limit [Å] | 1.968 | 6.220 | 1.970 |
Rmerge | 0.036 | 0.521 | |
Rmeas | 0.122 | ||
Rpim | 0.049 | 0.016 | 0.229 |
Total number of observations | 136723 | 4644 | 15942 |
Number of reflections | 22033 | ||
<I/σ(I)> | 10 | 24.1 | 2.8 |
Completeness [%] | 97.7 | 99.8 | 85.3 |
Redundancy | 6.2 | 5.8 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 3.5 | 293 | Cubic-like crystals |