4XQM
Crystal structure of the MRH domain of Glucosidase II beta bound to mannose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 98 |
Detector technology | IMAGE PLATE |
Collection date | 2013-07-01 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | I 4 |
Unit cell lengths | 57.571, 57.571, 58.321 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.161 - 1.625 |
R-factor | 0.1703 |
Rwork | 0.167 |
R-free | 0.19690 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.396 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SHELX |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.650 |
High resolution limit [Å] | 1.620 | 4.400 | 1.620 |
Rmerge | 0.064 | 0.030 | 0.395 |
Total number of observations | 153936 | ||
Number of reflections | 12000 | ||
<I/σ(I)> | 14.5 | ||
Completeness [%] | 99.0 | 99.7 | 79.6 |
Redundancy | 12.8 | 14.3 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.25 | 292 | 10mg/ml protein in 20mM Tris pH 7.5, 150mM NaCl, 100mM mannose mixed 1:1 with 100 mM triethanolamine HCl pH 8.25, 200 mM potassium glutamate, 28% PEG 4000 |