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4XGN

Crystal structure of 3-hydroxyacyl-CoA dehydrogenase in complex with NAD from Burkholderia thailandensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2014-02-12
DetectorRAYONIX MX-225
Wavelength(s)0.97872
Spacegroup nameP 1
Unit cell lengths71.220, 77.100, 109.350
Unit cell angles103.26, 93.98, 109.68
Refinement procedure
Resolution50.000 - 1.650
R-factor0.1557
Rwork0.154
R-free0.17710
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tpc
RMSD bond length0.014
RMSD bond angle1.740
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0001.690
High resolution limit [Å]1.6507.3801.650
Rmerge0.0810.0590.476
Rmeas0.0940.0690.550
Total number of observations976151
Number of reflections246070280617903
<I/σ(I)>11.2325.132.88
Completeness [%]97.198.695.4
Redundancy44
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5290Morpheus screen c6: 10% PEG 8000, 20% EG; 30mM each NaNO3, Na2HPO4, (NH4)2SO4; 100mM MOPS/HEPES pH 7.5; ButhA.0010.l.B1.PS01726 at 10mg/ml with 2.5mM NAD; direct cryo; tray 252631c6, puck sxz2-6

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PDB entries from 2024-05-15

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