4XFZ
Structure of the native full-length HIV-1 capsid protein in complex with PF-3450074 (PF74)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2014-07-30 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00012 |
Spacegroup name | P 6 |
Unit cell lengths | 92.181, 92.181, 56.976 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.000 - 2.700 |
R-factor | 0.2115 |
Rwork | 0.210 |
R-free | 0.24060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfx |
RMSD bond length | 0.012 |
RMSD bond angle | 1.450 |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.380 | 46.380 | 2.830 |
High resolution limit [Å] | 2.700 | 8.940 | 2.700 |
Rmerge | 0.080 | 0.032 | 1.682 |
Rpim | 0.025 | 0.011 | 0.535 |
Total number of observations | 85991 | 2252 | 10420 |
Number of reflections | 7709 | ||
<I/σ(I)> | 24.4 | 74.2 | 1.8 |
Completeness [%] | 99.5 | 99.2 | 96.5 |
Redundancy | 11.2 | 9.9 | 10.7 |
CC(1/2) | 0.999 | 0.999 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, Sodium cacodylate |