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4XEQ

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (Deval_0042, TARGET EFI-510114) BOUND TO COPURIFIED (R)-PANTOIC ACID

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2014-11-12
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths83.750, 73.600, 100.210
Unit cell angles90.00, 90.05, 90.00
Refinement procedure
Resolution25.254 - 1.700
R-factor0.164
Rwork0.157
R-free0.18470
Structure solution methodSAD
RMSD bond length0.012
RMSD bond angle1.375
Data scaling softwareAimless (0.1.27)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]25.26025.2601.730
High resolution limit [Å]1.7009.3101.700
Rmerge0.1120.0720.708
Rpim0.0440.0290.287
Total number of observations945105514143983
Number of reflections131847
<I/σ(I)>12.227.12.7
Completeness [%]98.688.697.6
Redundancy7.26.86.9
CC(1/2)0.9970.9960.765
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5298Protein (35.6 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT); Reservoir (0.2 M di-Ammonium Citrate pH 5.0 , 20 %(w/v) PEG 3350); Cryoprotection (80% Reservoir + 20% Glycerol)

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PDB entries from 2024-05-15

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