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4WTJ

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-AUCC, RNA PRIMER 5'-PGG, MN2+, AND ADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyCCD
Collection date2013-02-17
DetectorADSC QUANTUM 315r
Wavelength(s)1.12709
Spacegroup nameP 65
Unit cell lengths139.870, 139.870, 92.700
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.730 - 2.200
R-factor0.178
Rwork0.176
R-free0.21100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4obc
RMSD bond length0.011
RMSD bond angle1.489
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.260
High resolution limit [Å]2.2002.200
Rmerge0.0740.643
Rmeas0.0800.019
Total number of observations350400
Number of reflections52305539
<I/σ(I)>23.153.6
Completeness [%]99.8100
Redundancy6.76.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.6289NS5B AT 4.7 MG/ML IN 5 MM TRIS PH 7.5, 200 MM NH4OAC, 1 MM EDTA, 1 MM DTT AGAINST 25% PEG 550 MME, 50 MM MGCL2, 0.1 M HEPES PH 7.5 FOR CRYSTAL GROWTH SOAKED INTO 28% PEG 550 MME, 0.2 M AMMONIUM ACETATE, 0.05 M BISTRIS PROPANE PH 6.0, 0.05 M TRIS PH 7.2, 6 MM MNCL2, 10 MM CDP, 2 MM 5'-AGCC, 2 MM 5'-PGG, WITH 8% GLYCEROL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 251148A2, UNIQUE PUCK ID HDW8-4

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PDB entries from 2025-12-10

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