4WKB
Crystal structure of Vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with methylthio-DADMe-Immucillin-A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.192, 72.002, 61.648 |
Unit cell angles | 90.00, 110.32, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.370 |
R-factor | 0.1654 |
Rwork | 0.165 |
R-free | 0.18300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dp9 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.367 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.390 |
High resolution limit [Å] | 1.370 | 3.720 | 1.370 |
Rmerge | 0.048 | 0.034 | 0.220 |
Total number of observations | 330001 | ||
Number of reflections | 85031 | ||
<I/σ(I)> | 16.2 | 6.77 | |
Completeness [%] | 93.0 | 69.2 | 99.1 |
Redundancy | 3.9 | 3.8 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | Protein (10 mg/mL); Reservoir (0.1M di-ammonium hydrogen citrate and 15% PEG 3350); Cryoprotection (20% (v/v) glycerol) |