4WJ1
Crystal structure of EspB from the ESX-1 type VII secretion system
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 150 |
Detector technology | CCD |
Collection date | 2013-08-10 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97857 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 125.749, 125.749, 75.061 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 61.803 - 2.415 |
R-factor | 0.1774 |
Rwork | 0.175 |
R-free | 0.20110 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.033 |
Data scaling software | Aimless (0.3.5) |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.870 | 62.870 | 2.510 |
High resolution limit [Å] | 2.410 | 9.040 | 2.410 |
Rmerge | 0.118 | 0.064 | 0.611 |
Rpim | 0.026 | 0.014 | 0.137 |
Total number of observations | 580318 | 11256 | 57745 |
Number of reflections | 26601 | ||
<I/σ(I)> | 22.8 | 50.5 | 5.6 |
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 21.8 | 20 | 20.7 |
CC(1/2) | 0.999 | 0.999 | 0.972 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.8 | 298 | 100 mM HEPES, 540 mM MgCl2, 15% PEG 6000 |