4WDH
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation Y168A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-05-18 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.223 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.310, 48.330, 54.030 |
Unit cell angles | 90.00, 94.52, 90.00 |
Refinement procedure
Resolution | 53.862 - 1.900 |
R-factor | 0.2189 |
Rwork | 0.217 |
R-free | 0.25920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xmi |
RMSD bond length | 0.003 |
RMSD bond angle | 0.714 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.000 | 1.950 | |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.069 | 0.034 | 0.722 |
Rmeas | 0.083 | 0.040 | 0.927 |
Total number of observations | 42879 | ||
Number of reflections | 14974 | 200 | 850 |
<I/σ(I)> | 9.49 | 25.69 | 1.27 |
Completeness [%] | 93.0 | 99 | 72.3 |
Redundancy | 2.9 | 1.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | Na-acetate, PEG 4000 / 6000 |