4WDA
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation P296G, complexed with 2'-AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.03149 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.710, 46.840, 106.230 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.115 - 1.850 |
R-factor | 0.2197 |
Rwork | 0.218 |
R-free | 0.24850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xmi |
RMSD bond length | 0.004 |
RMSD bond angle | 0.823 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.000 | 1.900 | |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.076 | 0.032 | 1.583 |
Rmeas | 0.083 | 0.036 | 1.714 |
Total number of observations | 124185 | ||
Number of reflections | 17983 | 238 | 1307 |
<I/σ(I)> | 12.79 | 37.83 | 1.18 |
Completeness [%] | 99.8 | 96.7 | 99.9 |
Redundancy | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | Na-acetate, PEG 4000/6000 |