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4WD2

Crystal structure of an aromatic amino acid aminotransferase from Burkholderia cenocepacia J2315

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2014-08-25
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 31 1 2
Unit cell lengths59.220, 59.220, 200.270
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.647 - 1.950
R-factor0.1183
Rwork0.116
R-free0.15140
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tat
RMSD bond length0.005
RMSD bond angle0.893
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX ((phenix.refine: dev_1779))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0002.000
High resolution limit [Å]1.9508.7201.950
Rmerge0.0900.0310.346
Rmeas0.0950.0330.387
Total number of observations292285
Number of reflections296333851986
<I/σ(I)>22.5261.614.72
Completeness [%]99.198.290.9
Redundancy9.864.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290Rigaku Reagents JCSG+ screen d1: 24% PEG 1500, 20% glycerol; BuceA.01471.a.B1.PS01824 at 20 mg/ml + 2.5mM pyridoxal phosphate; di rect cryo; tray 257500 d1, puck zba1-4

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PDB entries from 2024-05-15

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