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4V5T

X-ray structure of the Grapevine Fanleaf virus

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyCCD
Collection date2009-04-24
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameP 1
Unit cell lengths279.400, 279.600, 293.300
Unit cell angles102.40, 116.40, 108.20
Refinement procedure
Resolution135.426 - 3.000
R-factor0.1911
Rwork0.190
R-free0.20730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2y26
RMSD bond length0.010
RMSD bond angle1.195
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareAMoRE
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]135.4263.080
High resolution limit [Å]3.0003.000
Rmerge0.1000.360
Number of reflections1214112
<I/σ(I)>9.22.5
Completeness [%]88.171.7
Redundancy22
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293CRYSTALS OF GFLV-F13 WERE GROWN AT 293K BY VAPOR DIFFUSION (1 MICROLITER SITTING DROPS) WITH A VIRUS SOLUTION AT 2.2 MG/ML AND A RESERVOIR CONTAINING 4% (M/V) PEG 3350, 0.1 M HEPES NA PH 7.5 AND 0.2% (M/V) AGAROSE.

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