4U7K
Crystal structure of the Clostridium histolyticum colH collagenase polycystic kidney disease-like domain 2a in the presence of calcium at 1.9 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 113 |
Detector technology | CCD |
Collection date | 2013-05-14 |
Detector | RIGAKU SATURN 92 |
Wavelength(s) | 1.54180 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.320, 87.610, 104.350 |
Unit cell angles | 90.00, 116.04, 90.00 |
Refinement procedure
Resolution | 93.760 - 1.910 |
R-factor | 0.1651 |
Rwork | 0.163 |
R-free | 0.20730 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.062 |
Data reduction software | d*TREK (9.9.9.4 W9RSSI) |
Data scaling software | d*TREK |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 22.110 | 22.110 | 1.980 |
High resolution limit [Å] | 1.910 | 4.110 | 1.910 |
Rmerge | 0.046 | 0.026 | 0.310 |
Total number of observations | 226167 | 24267 | 18912 |
Number of reflections | 61851 | ||
<I/σ(I)> | 13.8 | 34 | 3 |
Completeness [%] | 96.4 | 98.8 | 93.8 |
Redundancy | 3.63 | 3.7 | 3.11 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 290 | 0.2 M magnesium chloride, 0.1 M Tris-HCl pH 8.5, and 30% (w/v) PEG 4000. Crystals soaked in 0.2 M magnesium chloride, 0.05 M calcium chloride, 0.1 M Tris-HCl pH 8.5, and 15% (w/v) PEG 4000 |