4TXN
Crystal structure of uridine phosphorylase from Schistosoma mansoni in complex with 5-fluorouracil
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-05-31 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 95.643, 107.488, 115.576 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.016 - 2.000 |
R-factor | 0.1732 |
Rwork | 0.172 |
R-free | 0.20650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4txj |
RMSD bond length | 0.004 |
RMSD bond angle | 0.865 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.120 | |
High resolution limit [Å] | 2.000 | 5.880 | 2.000 |
Rmerge | 0.098 | 0.027 | 0.539 |
Rmeas | 0.114 | 0.031 | 0.630 |
Total number of observations | 306780 | ||
Number of reflections | 80105 | 3369 | 12190 |
<I/σ(I)> | 11.61 | 36.66 | 2.41 |
Completeness [%] | 98.6 | 98.2 | 94.4 |
Redundancy | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 200mM ammonium sulphate, 100mM Bis-tris pH 5.5, 20-25% PEG 3350 |