4TL0
Crystal structure of death-associated protein kinase 1 with a crucial phosphomimicking mutation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.07106 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.340, 77.794, 110.123 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.539 - 2.700 |
R-factor | 0.1703 |
Rwork | 0.168 |
R-free | 0.21780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w4k |
RMSD bond length | 0.003 |
RMSD bond angle | 0.697 |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP (11.0.05) |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.539 | 77.794 | 2.850 |
High resolution limit [Å] | 2.700 | 8.540 | 2.700 |
Rmerge | 0.065 | 0.836 | |
Rmeas | 0.191 | ||
Rpim | 0.053 | 0.021 | 0.239 |
Total number of observations | 159710 | 4949 | 22870 |
Number of reflections | 12440 | ||
<I/σ(I)> | 11.3 | 16.3 | 5.5 |
Completeness [%] | 99.9 | 98.4 | 99.9 |
Redundancy | 12.8 | 11 | 13 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 292 | 0.15 ammonium sulfate, 0.1M TRIS, pH 8.0, 15%(w/v) PEG 4000 |