4RZL
DNA recognition domain of the cytosine modification-dependent restriction endonuclease LpnPI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-12 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0012 |
Spacegroup name | P 61 |
Unit cell lengths | 82.037, 82.037, 152.829 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.019 - 2.100 |
R-factor | 0.1691 |
Rwork | 0.166 |
R-free | 0.19860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4oc8 chain A residues 6-22 31-85 97-208 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.092 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP (11.2.05) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.400 | 41.400 | 2.210 |
High resolution limit [Å] | 2.100 | 6.640 | 2.100 |
Rmerge | 0.032 | 0.524 | |
Total number of observations | 13861 | 63646 | |
Number of reflections | 33984 | ||
<I/σ(I)> | 21.5 | 17.2 | 1.4 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 12.9 | 12.5 | 12.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 0.16 M (NH4)2SO4, 0.08 M Na-HEPES, 20% w/v PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |