4RYA
Crystal structure of abc transporter solute binding protein AVI_3567 from AGROBACTERIUM VITIS S4, TARGET EFI-510645, with bound D-mannitol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-05 |
Detector | RAYONIX MX225HE |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.413, 61.256, 65.501 |
Unit cell angles | 90.00, 104.01, 90.00 |
Refinement procedure
Resolution | 25.000 - 1.500 |
R-factor | 0.13314 |
Rwork | 0.132 |
R-free | 0.16824 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.565 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | SHELX |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.122 | 0.490 |
Number of reflections | 73250 | |
<I/σ(I)> | 12.95 | 4.5 |
Completeness [%] | 99.3 | 98.4 |
Redundancy | 7.5 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8.5 | PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, 10 MM D-MANNITOL), RESERVOIR: 0.085 M TRIS-HCL, PH 8.5, 0.17 M SODIUM ACETATE, 25% PEG3350, 15% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K |