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4RW9

Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) variant in complex with (E)-3-(3-chloro-5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ532), a non-nucleoside inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]77
Detector technologyCCD
Collection date2013-06-05
DetectorADSC QUANTUM 315
Wavelength(s)1.075
Spacegroup nameC 1 2 1
Unit cell lengths161.416, 74.026, 108.102
Unit cell angles90.00, 99.69, 90.00
Refinement procedure
Resolution34.806 - 2.986
R-factor0.2342
Rwork0.232
R-free0.28040
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)PDB Code: 2ZD1
RMSD bond length0.003
RMSD bond angle0.711
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Refinement softwarePHENIX (1.8.2_1309)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.030
High resolution limit [Å]2.9808.0802.980
Number of reflections24980
<I/σ(I)>24.90.0850.566
Completeness [%]97.179.298.7
Redundancy3.73.33.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP627716-20% (w/v) PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, 5 mM spermine, and 50 mM citric acid pH 6.0 , VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-05-15

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