4RW9
Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) variant in complex with (E)-3-(3-chloro-5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ532), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2013-06-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.075 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 161.416, 74.026, 108.102 |
Unit cell angles | 90.00, 99.69, 90.00 |
Refinement procedure
Resolution | 34.806 - 2.986 |
R-factor | 0.2342 |
Rwork | 0.232 |
R-free | 0.28040 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | PDB Code: 2ZD1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.711 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.030 |
High resolution limit [Å] | 2.980 | 8.080 | 2.980 |
Number of reflections | 24980 | ||
<I/σ(I)> | 24.9 | 0.085 | 0.566 |
Completeness [%] | 97.1 | 79.2 | 98.7 |
Redundancy | 3.7 | 3.3 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | 16-20% (w/v) PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, 5 mM spermine, and 50 mM citric acid pH 6.0 , VAPOR DIFFUSION, HANGING DROP, temperature 277K |