4RSO
The structure of the neurotropic AAVrh.8 viral vector
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-06-04 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.91860 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 355.500, 358.900, 371.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 3.500 |
R-factor | 0.217 |
Rwork | 0.217 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AAV8 VP1 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.370 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | CNS (1.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.630 |
High resolution limit [Å] | 3.500 | 7.530 | 3.500 |
Number of reflections | 487416 | ||
<I/σ(I)> | 3.2 | ||
Completeness [%] | 90.0 | 97.4 | 86 |
Redundancy | 2.8 | 3.2 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 298 | Crystallization drops consisted of virus sample (10 mg/ml) in 1X PBS mixed with reservoir solution (5.5% PEG8000 in 1xPBS) at a 1:1 ratio (v/v) and equilibrated against 1 ml of reservoir solution at 298K. pH 7.4; temperature 298K; hanging-drop vapor-diffusion, VAPOR DIFFUSION, HANGING DROP |