4RDO
Structure of YTH-YTHDF2 in the free state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 65 |
Unit cell lengths | 139.280, 139.280, 112.950 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.280 - 2.150 |
R-factor | 0.2156 |
Rwork | 0.213 |
R-free | 0.27020 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.256 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | SOLVE |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 120.620 | 42.276 | 2.270 |
High resolution limit [Å] | 2.150 | 6.800 | 2.150 |
Rmerge | 0.037 | 0.542 | |
Total number of observations | 9502 | 43694 | |
Number of reflections | 65587 | ||
<I/σ(I)> | 10.3 | 13.2 | 1.4 |
Completeness [%] | 97.0 | 91.8 | 98.4 |
Redundancy | 4.5 | 4.7 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 283 | 0.2 M Potassium tartrate, 0.1 M Sodium citrate tribasic dehydrate, PH 5.6, 2M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 283K |