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4PGY

Structure of human DNA polymerase beta complexed with a nicked DNA containing a GT at N-1 position and GC at N position

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2013-10-08
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths54.440, 78.928, 54.348
Unit cell angles90.00, 106.90, 90.00
Refinement procedure
Resolution19.115 - 2.260
R-factor0.2129
Rwork0.210
R-free0.26460
RMSD bond length0.003
RMSD bond angle0.635
Data reduction softwareDENZO
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 Overall
Low resolution limit [Å]20.000
High resolution limit [Å]2.260
Number of reflections19762
<I/σ(I)>20.52
Completeness [%]94.8
Redundancy5.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529814%?23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5)

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PDB entries from 2024-05-15

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