4PD5
Crystal structure of vcCNT-7C8C bound to gemcitabine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-04-09 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0004 |
Spacegroup name | P 63 |
Unit cell lengths | 119.046, 119.046, 82.285 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.684 - 2.906 |
R-factor | 0.2283 |
Rwork | 0.227 |
R-free | 0.25760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tij |
RMSD bond length | 0.004 |
RMSD bond angle | 0.664 |
Data scaling software | SCALEPACK |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.970 |
High resolution limit [Å] | 2.900 | 7.150 | 2.900 |
Rmerge | 0.061 | 0.043 | 0.554 |
Total number of observations | 83148 | ||
Number of reflections | 14694 | ||
<I/σ(I)> | 11.5 | ||
Completeness [%] | 99.6 | 99.3 | 99 |
Redundancy | 5.7 | 6.5 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 8.5 | 290 | 37-42% PEG400, 100 mM CaCl2 |