4PCD
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND L-GALACTONATE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-02 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.375, 73.260, 75.889 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.607 - 1.700 |
R-factor | 0.1376 |
Rwork | 0.135 |
R-free | 0.17910 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.186 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 75.890 | 75.890 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.135 | 0.085 | 0.726 |
Rpim | 0.041 | 0.034 | 0.218 |
Total number of observations | 383228 | 1288 | 20359 |
Number of reflections | 32764 | ||
<I/σ(I)> | 16 | 20.2 | 5.1 |
Completeness [%] | 99.8 | 73.8 | 99.9 |
Redundancy | 11.7 | 6.3 | 11.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein (42.4 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-MANNONATE); Reservoir (0.1 M Tris pH 8.5, 2.4 M di-Ammonium Phosphate); Cryoprotection (80% Reservoir + 20% diethylene glycol) |