4P3S
Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-11 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.91938, 0.92004, 0.90659, 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 34.090, 88.830, 46.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 100.000 - 2.300 |
Rwork | 0.219 |
R-free | 0.26460 |
Structure solution method | MAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.910 |
Data scaling software | d*TREK |
Phasing software | PHENIX |
Refinement software | CNS |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.420 | 44.420 | 2.380 |
High resolution limit [Å] | 2.300 | 4.950 | 2.300 |
Rmerge | 0.050 | 0.023 | 0.347 |
Total number of observations | 45316 | 4436 | 4663 |
Number of reflections | 6694 | ||
<I/σ(I)> | 17.6 | 49.2 | 4.4 |
Completeness [%] | 99.7 | 97.6 | 100 |
Redundancy | 6.72 | 6.05 | 7.04 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | Sodium Cacodylate (pH7), Spermine tetrahydrochloride, MPD, Sodium Chloride |