4O8I
1.45A resolution structure of PEG 400 Bound Cyclophilin D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-01-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.564, 57.011, 57.336 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.115 - 1.450 |
R-factor | 0.1614 |
Rwork | 0.160 |
R-free | 0.18980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bit |
RMSD bond length | 0.008 |
RMSD bond angle | 0.909 |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.2) |
Refinement software | PHENIX (1.8.4_1488) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.560 | 1.470 | |
High resolution limit [Å] | 1.450 | 1.450 | |
Rmerge | 0.097 | 0.011 | |
Total number of observations | 7643 | 1004 | |
Number of reflections | 24241 | ||
<I/σ(I)> | 12.3 | 1.9 | |
Completeness [%] | 99.9 | 100 | |
Redundancy | 6.4 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8.5 | 293 | 20% (w/v) PEG 8000, 100 mM Tris, 200 mM MgCl2, 20% (v/v) PEG 400, pH 8.5, vapor diffusion, temperature 293K |