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4O7M

Crystal structure of a trap periplasmic solute binding protein from shewanella loihica PV-4, target EFI-510273, with bound L-malate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-11-08
DetectorRAYONIX 225 HE
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths80.515, 118.640, 89.901
Unit cell angles90.00, 93.18, 90.00
Refinement procedure
Resolution22.603 - 1.500
R-factor0.1391
Rwork0.138
R-free0.15750
Structure solution methodSAD
RMSD bond length0.010
RMSD bond angle1.221
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwarePHENIX (AUTOSOLVE)
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]118.64022.6031.580
High resolution limit [Å]1.5004.7401.500
Rmerge0.1210.0550.601
Total number of observations65502288028
Number of reflections268529
<I/σ(I)>10.59.91.3
Completeness [%]100.099100
Redundancy7.67.67.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5298Protein (34.4 mg/ml, 10 mM HEPES, 5 mM DTT, 10 mM L-Malate); Reservoir (0.2 M Sodium Citrate, 20% (w/v) PEG 3350); Cryoprotection (Reservoir with 20% Diethylene Glycol), pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K

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PDB entries from 2024-05-15

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