4O7M
Crystal structure of a trap periplasmic solute binding protein from shewanella loihica PV-4, target EFI-510273, with bound L-malate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-08 |
Detector | RAYONIX 225 HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.515, 118.640, 89.901 |
Unit cell angles | 90.00, 93.18, 90.00 |
Refinement procedure
Resolution | 22.603 - 1.500 |
R-factor | 0.1391 |
Rwork | 0.138 |
R-free | 0.15750 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.221 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHENIX (AUTOSOLVE) |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 118.640 | 22.603 | 1.580 |
High resolution limit [Å] | 1.500 | 4.740 | 1.500 |
Rmerge | 0.121 | 0.055 | 0.601 |
Total number of observations | 65502 | 288028 | |
Number of reflections | 268529 | ||
<I/σ(I)> | 10.5 | 9.9 | 1.3 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 7.6 | 7.6 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Protein (34.4 mg/ml, 10 mM HEPES, 5 mM DTT, 10 mM L-Malate); Reservoir (0.2 M Sodium Citrate, 20% (w/v) PEG 3350); Cryoprotection (Reservoir with 20% Diethylene Glycol), pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |