4O0K
Crystal structure of 1-pyrroline-4-hydroxy-2-carboxylate deaminase from Brucella melitensis with covalently bound substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-03 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 95.280, 95.280, 125.250 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 1.500 |
R-factor | 0.1593 |
Rwork | 0.158 |
R-free | 0.17700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mpq |
RMSD bond length | 0.016 |
RMSD bond angle | 1.683 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.066 | 0.047 | 0.518 |
Number of reflections | 54188 | 716 | 3929 |
<I/σ(I)> | 17.11 | 34.35 | 4.14 |
Completeness [%] | 99.9 | 97 | 100 |
Redundancy | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | EmeraldBio MCSG1 screen, a11: 10% PEG 4000, 200mM MgCl2, 100mM MES/NaOH; crystals soaked over night with 20mM pyruvate; cryo 20% EG; BrmeB.01563.a.B1.PS01874 at 19.3mg/ml, tray 247709a11, puck amw3-4, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K |