4NTI
Crystal structure of D60N mutant of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with C12 ceramide-1-phosphate (d18:1/12:0) at 2.9 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-10-18 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 118.118, 118.118, 152.378 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.488 - 2.899 |
R-factor | 0.1975 |
Rwork | 0.195 |
R-free | 0.22730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nt1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.747 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.899 | 6.240 | 2.899 |
Rmerge | 0.094 | 0.030 | 0.682 |
Number of reflections | 27802 | ||
<I/σ(I)> | 6.5 | ||
Completeness [%] | 99.9 | 99.1 | 100 |
Redundancy | 4.7 | 4.4 | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1 M MIB buffer, pH 8.0, 25% PEG1500, VAPOR DIFFUSION, SITTING DROP, temperature 293K |