4NI3
Crystal Structure of GH29 family alpha-L-fucosidase from Fusarium graminearum in the closed form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-20 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 |
Unit cell lengths | 53.511, 75.512, 80.367 |
Unit cell angles | 105.61, 107.19, 106.71 |
Refinement procedure
Resolution | 37.931 - 1.399 |
R-factor | 0.1449 |
Rwork | 0.145 |
R-free | 0.16670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1HL8 (peptide only) |
RMSD bond length | 0.010 |
RMSD bond angle | 1.248 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.931 | 1.420 |
High resolution limit [Å] | 1.399 | 1.399 |
Number of reflections | 198748 | |
<I/σ(I)> | 2.3 | |
Completeness [%] | 94.9 | 92 |
Redundancy | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | batch method | 8 | 293.15 | 1:1 v/v mixture of 14-16 mg/ml alpha-L-fucosidase (stored in 25mM Tris pH 7.5 and partially deglycosylated by incubation 10:1:1 v/v ratio with EndoH and 500 mM sodium citrate pH 5.5 buffer from New England Biolabs for more than 24hrs before setting up the drop) with 40% PEG 2000mme, 0.1M Tris pH 8.0, crystals grow within two days, cryoprotected by Mitegen LV cryo-oil, batch method, temperature 293.15K |