4NH6
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 15-mer siRNA having 5'-pUUU and UU-3' ends (2.55 Angstrom resolution)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-07-07 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97949 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.036, 84.126, 51.496 |
Unit cell angles | 90.00, 109.67, 90.00 |
Refinement procedure
Resolution | 33.666 - 2.551 |
R-factor | 0.196 |
Rwork | 0.193 |
R-free | 0.24510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ngd |
RMSD bond length | 0.007 |
RMSD bond angle | 1.089 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.550 | 5.490 | 2.550 |
Rmerge | 0.073 | 0.042 | 0.449 |
Number of reflections | 15309 | ||
<I/σ(I)> | 10.4 | ||
Completeness [%] | 99.5 | 98.9 | 96.7 |
Redundancy | 4 | 3.9 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2 M sodium chloride, 0.05 M Tris-HCl, pH 8.3-8.8, 12-15% PEG20000, VAPOR DIFFUSION, HANGING DROP, temperature 293K |