4NH3
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-pU and UU-3' ends (2.6 Angstrom resolution)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-03-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 109.356, 83.858, 51.102 |
Unit cell angles | 90.00, 113.20, 90.00 |
Refinement procedure
Resolution | 27.023 - 2.616 |
R-factor | 0.2042 |
Rwork | 0.196 |
R-free | 0.28370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ngd |
RMSD bond length | 0.007 |
RMSD bond angle | 1.015 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.590 | 2.600 |
Rmerge | 0.107 | 0.058 | 0.695 |
Number of reflections | 13339 | ||
<I/σ(I)> | 7.9 | ||
Completeness [%] | 99.4 | 99.6 | 96.1 |
Redundancy | 4.6 | 4.7 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.2 M sodium chloride, 0.1 M sodium citrate, pH 6.5, 18% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K |