4MZU
Crystal structure of FdtD, a bifunctional ketoisomerase/N-acetyltransferase from Shewanella denitrificans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-12 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9794 |
Spacegroup name | P 1 |
Unit cell lengths | 85.314, 109.443, 127.847 |
Unit cell angles | 79.23, 79.98, 84.89 |
Refinement procedure
Resolution | 30.000 - 2.200 |
R-factor | 0.20751 |
Rwork | 0.204 |
R-free | 0.26985 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | model from SAD experiment |
RMSD bond length | 0.013 |
RMSD bond angle | 2.230 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | SOLVE |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.071 | 0.223 |
Number of reflections | 205772 | |
<I/σ(I)> | 27 | 4.7 |
Completeness [%] | 91.1 | 87 |
Redundancy | 3 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 100 mM HEPPS, 7-12% PEG-8000, 100 mM MgCl2, 10 mM dTDP, 10 mM CoA, VAPOR DIFFUSION, HANGING DROP, temperature 293K |