4MUP
Crystal structure of Agrobacterium tumefaciens ATU3138 (EFI target 505157), apo structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-06-02 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.202, 77.557, 99.714 |
Unit cell angles | 90.00, 95.49, 90.00 |
Refinement procedure
Resolution | 31.598 - 1.600 |
R-factor | 0.1486 |
Rwork | 0.147 |
R-free | 0.18090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 2ffi 4do7 4i6k 4dia 4di8 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.276 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 99.257 | 99.257 | 1.690 |
High resolution limit [Å] | 1.600 | 5.060 | 1.600 |
Rmerge | 0.095 | 0.037 | 0.541 |
Total number of observations | 11086 | 54371 | |
Number of reflections | 103208 | ||
<I/σ(I)> | 8.5 | 16.9 | 1.4 |
Completeness [%] | 97.1 | 91.8 | 100 |
Redundancy | 3.6 | 3.5 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Protein (10 mg/ml in 20 mM Tris, pH 7.9, 150 mM NaCl, 5 mM MgCl2). Reservoir (0.1 M HEPES, pH 7.5, 20% (w/v) PEG 4000, 10% (w/v) Isopropanol) (MCSG4 G11)). Cryoprotection (Reservoir+20% isopropanol), vapor diffusion, sitting drop, temperature 298K, VAPOR DIFFUSION, SITTING DROP |