4MHF
Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-08-23 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.480, 45.960, 63.980 |
Unit cell angles | 90.00, 97.66, 90.00 |
Refinement procedure
Resolution | 21.582 - 1.460 |
R-factor | 0.1187 |
Rwork | 0.117 |
R-free | 0.14470 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.008 |
RMSD bond angle | 1.249 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | AMoRE |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.409 | 22.980 | 1.540 |
High resolution limit [Å] | 1.460 | 4.630 | 1.460 |
Rmerge | 0.046 | 0.039 | 0.133 |
Total number of observations | 8694 | 36168 | |
Number of reflections | 41662 | ||
<I/σ(I)> | 26.2 | 14.5 | 4.9 |
Completeness [%] | 92.6 | 98.5 | 87.8 |
Redundancy | 6.3 | 5.9 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | Protein (> 50 mg/ml, 10 mM Hepes, pH 7.5, 10 mM Glucuronate, 5 mM DTT); Reservoir (2.0 M Ammonium Sulfate, 0.1 M Tris, pH 8.5(MCSG1 F10)); Cryoprotection (20% Diethylene Glycol, 80% of Reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 293K |