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4MCO

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-07-23
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 21 21 21
Unit cell lengths75.108, 97.107, 133.027
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.702 - 1.600
R-factor0.1503
Rwork0.149
R-free0.18060
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle1.218
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]78.433133.0271.690
High resolution limit [Å]1.6005.0601.600
Rmerge0.0890.0270.689
Total number of observations29746107972
Number of reflections128663
<I/σ(I)>15.5221.1
Completeness [%]100.099.8100
Redundancy6.86.85.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529850 mg/mL protein in 10 mM HEPES, pH 7.5, 10 mM malonate, reservoir: MCSG1 G7 (0.1 M Tris, pH 8.5, 25% w/v PEG3350), cryoprotectant: 4:1 50% PEG8000:reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 298K

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PDB entries from 2024-05-15

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