4MCO
Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-23 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.108, 97.107, 133.027 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.702 - 1.600 |
R-factor | 0.1503 |
Rwork | 0.149 |
R-free | 0.18060 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.218 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | AMoRE |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.433 | 133.027 | 1.690 |
High resolution limit [Å] | 1.600 | 5.060 | 1.600 |
Rmerge | 0.089 | 0.027 | 0.689 |
Total number of observations | 29746 | 107972 | |
Number of reflections | 128663 | ||
<I/σ(I)> | 15.5 | 22 | 1.1 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 6.8 | 6.8 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 50 mg/mL protein in 10 mM HEPES, pH 7.5, 10 mM malonate, reservoir: MCSG1 G7 (0.1 M Tris, pH 8.5, 25% w/v PEG3350), cryoprotectant: 4:1 50% PEG8000:reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 298K |