4MCI
Crystal structure of uridine phosphorylase from vibrio fischeri es114 complexed with DMSO, NYSGRC Target 029520.
Experimental procedure
Experimental method | SAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-13 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9791 |
Spacegroup name | H 3 2 |
Unit cell lengths | 163.993, 163.993, 58.900 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.340 - 2.010 |
R-factor | 0.1789 |
Rwork | 0.178 |
R-free | 0.19860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lnh |
RMSD bond length | 0.009 |
RMSD bond angle | 1.219 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.996 | 81.996 | 2.120 |
High resolution limit [Å] | 2.010 | 6.360 | 2.010 |
Rmerge | 0.059 | 0.482 | |
Total number of observations | 4395 | 10720 | |
Number of reflections | 19810 | ||
<I/σ(I)> | 12.2 | 10.3 | 1.6 |
Completeness [%] | 98.2 | 96.7 | 89.4 |
Redundancy | 6.7 | 6.7 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.2 M AMMONIUM SULFATE, 0.1 M HEPES:NAOH, PH 8.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K |