4M1N
Crystal structure of Plasmodium falciparum ubiquitin conjugating enzyme UBC9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-06-12 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.1271 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 85.190, 90.770, 122.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.059 - 1.500 |
R-factor | 0.1651 |
Rwork | 0.164 |
R-free | 0.19580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jue |
RMSD bond length | 0.007 |
RMSD bond angle | 1.195 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.000 | 31.000 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.126 | ||
Number of reflections | 76146 | ||
<I/σ(I)> | 8.6 | ||
Completeness [%] | 100.0 | 95.6 | 99 |
Redundancy | 7.16 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M NaF, 20% PEG3350 Cryo: 30% PEG3350, 10% glycerol, 0.2M NaF, 100mM glycine, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |