4LY4
Crystal structure of peptidoglycan deacetylase (HP0310) with Zinc from Helicobacter pylori
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE BM16 |
| Synchrotron site | ESRF |
| Beamline | BM16 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2011-03-08 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 1.28210 |
| Spacegroup name | I 2 2 2 |
| Unit cell lengths | 113.640, 153.930, 153.880 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 30.475 - 2.199 |
| R-factor | 0.171 |
| Rwork | 0.169 |
| R-free | 0.20710 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3qbu |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.199 |
| Data reduction software | MOSFLM |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | PHENIX ((phenix.refine: dev_1352)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 31.850 | 2.320 |
| High resolution limit [Å] | 2.200 | 2.200 |
| Rmerge | 0.088 | 0.511 |
| Number of reflections | 68530 | |
| <I/σ(I)> | 2.5 | |
| Completeness [%] | 99.2 | 98.2 |
| Redundancy | 5.7 | 4.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.2 M Ammonium Sulphate, 0.1M Tri Sodium citrate pH 5.6, 15% (w/v) PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
